Calculate Immunophenoscore (IPS) — deconvo

Calculates immune phenotype scores from gene expression data.

Usage

deconvo_ips(eset, project = NULL, plot = FALSE)

Arguments

eset: Gene expression matrix.
project: Optional project name. Default is `NULL`.
plot: Logical: generate visualization. Default is `FALSE`.

Value

Data frame with IPS scores. Columns suffixed with `_IPS`.

Author

Dongqiang Zeng

Examples

if (FALSE) { # \dontrun{
ips_genes <- load_data("ips_gene_set")
if (!is.null(ips_genes)) {
  set.seed(123)
  sim_eset <- matrix(rnorm(nrow(ips_genes) * 2), nrow(ips_genes), 2)
  rownames(sim_eset) <- ips_genes$GENE
  colnames(sim_eset) <- paste0("Sample", 1:2)
  result <- deconvo_ips(eset = sim_eset, project = "Example")
  if (!is.null(result)) head(result)
}
} # }