Signature Score Calculation Methods

A named vector of supported methods for calculating signature scores.

Usage

signature_score_calculation_methods

Format

Named character vector:

PCA

Principal Component Analysis method ("pca")

ssGSEA

Single-sample Gene Set Enrichment Analysis ("ssgsea")

z-score

Z-score transformation method ("zscore")

Integration

Integration of multiple methods ("integration")

Examples

signature_score_calculation_methods
#>           PCA        ssGSEA       z-score   Integration 
#>         "pca"      "ssgsea"      "zscore" "integration" 
signature_score_calculation_methods["PCA"]
#>   PCA 
#> "pca"