Agent-assisted workflow
Install the agent skills
iobrpy-cli agent install --client all
Start Claude Code or Codex
Inspect the project
/iobrpy Please scan /analysis/IOBRpy_PRJNA1161405_demo. Show the full checklist first, then report the current stage and the best next step.
Run the recommended analysis
/iobrpy Run the recommended analysis step and save the outputs to /analysis/IOBRpy_PRJNA1161405_demo/<output_directory>.
Review the results
/iobrpy-result Please audit and summarise /analysis/IOBRpy_PRJNA1161405_demo/<output_directory>. Perform appropriate statistical analyses and compare the Normal and HCC groups. Generate method-aware visualisations in R and provide a basic interpretation of the results.