Chapter 1 How to install IOBR

1.1 ⏳ Install Dependency Packages

It is essential that you have R 3.6.3 or above already installed on your computer or server (R>4.1 is recommended for some suggested packages). IOBR is a pipeline that utilizes many other R packages that are currently available from CRAN, Bioconductor (and GitHub).

if (!requireNamespace("pak", quietly = TRUE)) install.packages("pak")

1.2 💻 Install IOBR package

When the dependent environments are built, users are able to install IOBR from github by typing the following code into your R session:

if (!requireNamespace("IOBR", quietly = TRUE)) pak::pak("IOBR/IOBR")

library(IOBR)

1.3 📌 How to update IOBR

pak::pak("IOBR/IOBR")